NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209296_1012852

Scaffold Ga0209296_1012852


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1012852 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4951
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000922Metagenome833Y
F001964Metagenome610Y
F002227Metagenome580Y
F028148Metagenome192Y
F086618Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10128521F001964GGAGMSRNLFAKPIYKVQLSGAIGWSDMKEKVVSYRTVEFSSRKDAEKAARELNPGEYTQGRIRVVPVELSEDYDIYPVVERMSEKPKSI
Ga0209296_101285211F000922N/AMDKSKWEKAKAKYFAGETWETIANDLQLNRATLQQKASLEGITKLKAQMQTVCIEKKTQSIEALSAIVRSKLAEDAASTIERVNGYDLDGIKDESLREGILQSVSKRSALVFGWSEGNESTSVSINLLGSMPDKLFHVEQSVNPV
Ga0209296_10128522F002227N/AMKLTIQSRDNAQTIVDLFNAILTGEEAENGATPLSIYDDNKHICSLIAKDGHQILELIIEREEGDKLCPGTPDLETL
Ga0209296_10128525F028148N/AMKTIHEIIQEIQFFDPAVRAFDPHNLPQSVRAYLHHNYRMDSRLTDEEQQVVETAFPSFADDLVQTIIDDPRPDATRYYLFDDGSLYARTNAGPELWSDAQVFVVERILPVMRLSRLDADLMRAIGMDEQVSEVRNDFYSSFAHVLNRDCGIPYSDAREHWNAYSRQLSDSACEAVVLGGSESGRAEGIRFASEYTVNA
Ga0209296_10128526F086618N/AMKSIQRIEAAVDNLLNGNLTHARKSARGLTYSDIFDWLTGPVGWTENRSRACADYLIGRIDYRAYCNADR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.