Scaffold Ga0209296_1012484

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1012484
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5041
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008296	Metagenome	335	Y
F020684	Metagenome	222	Y
F022871	Metagenome	212	Y
F029029	Metagenome / Metatranscriptome	189	Y
F046331	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10124841	F046331	N/A	VHESKKMERPKRSFLFIRTGEQIVSHSEAPISITIKTASGSLVTVRASSGEELDAVVATGLAAITSATTELEQAIRGTVPTPMTVGAIASALGASISPMDNSTASLSGRNCPHGHMTAIQGTGKDGSTYRGYFCAAPKGAFDKCKNVYLKTTDAAWSTFVAEQVK
Ga0209296_101248410	F029029	N/A	MKSMSEEPKEIKDLFKKDYTNSMDLRGHPIGDICVCGSQLFTAIVAFEYGEIAFYFLDGECVDCGSLVTLPTPIDNIGMDCD
Ga0209296_101248413	F020684	N/A	MNRLYSLTPEEEAIAVEVGYQRQKPYFGDPTRNINYSEGDLWELWQHAVAAGSELAFARMIGNTTFVPHFNKWKNELDIPGLGEVRYTFNDQPKLRYTNRDNDSLVYILMADGMRHKTRRAAPDWLGAPYKAVGWLYGSQCKVDTFKYNEKSWYVPAAYLSSMDT
Ga0209296_10124847	F022871	AGGAG	MSESENVWETDEELWNFIGENKRLVGLQISDGQGLDILNALRDIYITVDDDPKSAMRMLSLLATVIYASSIGEGQQFTDEIQVAAAMEQFDSSMKEMLSEEPK
Ga0209296_10124849	F008296	AGG	MTDAWVDEYELLVSTLASEYYRKYPVTETEDIRQVLWVWFLTHPVKYTEWSKLPPKDKERLIARSLRNAALKYCEQEKARKIGYDISDLYYYDSSVIEAFLPSIIGNTYEIPSKIKDLNFKFGKSGEVTDGNNWLVLRSDIEKAFNRLAEAKQNILRIKFSAENYEWSDLGKELDTSAEGARKRVERAISSLVKILGGWRTYSEPDVIESKEENEEHE