Scaffold Ga0209296_1012292

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1012292
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5089
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (27.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019832	Metagenome	227	N
F031482	Metagenome / Metatranscriptome	182	Y
F051912	Metagenome / Metatranscriptome	143	N
F073545	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_101229214	F073545	N/A	MLTAKEKAVELYNRYDELGRDFTRGVSMREFAKECALVCCDQVLSDMGADRGHQYWTEVKAEIQKL
Ga0209296_101229216	F051912	N/A	MTEKEKAESLVDEFYQYTNTNSRENAKACARILAKEVIVKLKYNKVMNVIVEYWEDVLIEIDRIPAFKE
Ga0209296_101229217	F031482	N/A	MRNKYEKSPLSLIDGGSKIRITFKNGIEREYDNIKDVSAYVAKVLSESDYMINKIEMEKEVVTKEWKPLFGRSRYGTYGSESYHTEI
Ga0209296_10122925	F019832	N/A	MRKMIQSNASVSFNAVVTYTDILGTKHNISCRTRNQIKQANAFLSMFKREGTTIKALAAQYNVKNGKFQNVSRLISDIVMVGFSKEAAKRIVASSL