Scaffold Ga0209296_1011738

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1011738
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5226
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022870	Metagenome	212	Y
F024101	Metagenome	207	Y
F033009	Metagenome / Metatranscriptome	178	Y
F042303	Metagenome	158	Y
F063633	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_101173810	F033009	AGGA	VSNSTQLWYAGTITQFGDMQKIYDDETLWTLESKDGKWASVILDGVDVYNVRGEGAWNLARKVAESHILKKEQLQQEGWVTE
Ga0209296_101173813	F024101	GAG	VPKEKPIHKMVDEVFDKELETELFDDIVEERNFIVNTLKTWIETDAIWEQMVNNKEERKQFLMHMQMLFLTELENSTLIELATTKHGDK
Ga0209296_101173815	F063633	AGG	MAHTYKDRKVQHVQGLRRSSASGTHKNKVRDRQKRLSSATIWKDYLKENENE
Ga0209296_10117382	F022870	GAGG	MKLTQRGKYVVVITYTIIMTLLLVMVWNKYDKKGCVDKYTADILATQFLYGEGEDVDRAMTAIYNNGGWIEDELTPDVEVIFPCLKNEGLV
Ga0209296_10117384	F042303	AGG	MKIYSKRYRAIENTKSLLSDALYNTKYHVSNVVDTIRYTHDETWLAIVLVSTWVFCAVFATWSY