Scaffold Ga0209296_1011531

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1011531
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5281
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011750	Metagenome / Metatranscriptome	287	Y
F018529	Metagenome / Metatranscriptome	234	Y
F034572	Metagenome / Metatranscriptome	174	N
F038235	Metagenome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_101153110	F034572	N/A	MSDQYRGSIKQRFAWEDVGGADIPQGLFTDFNEKFKAWEKRRGFSNETDFNGNPFGHNDKKPEPVKPLRGIALRAKRALDNKKEALLKKKTSAKFAPDIVGKRFASNSNAQRKIKKYTTENHAIIPAGYKFGINKIDWGCYEITGNRNPIKK
Ga0209296_10115312	F038235	N/A	MIREILAPFERVTYVREDGNQAVYKVFRPTKHLFVNKKKDKGAVVGFRAWKMPDSGADERMGWRSFRFDRIASRKLTFI
Ga0209296_10115313	F011750	N/A	MNKKWTPRSLRWNDAERQAKKIQAKNNREIRLMFWRESQVLREQIQKEISQKVLAKRAAI
Ga0209296_10115316	F018529	AGAAG	MNIQEFKQIFCERGGSVFPDQIEQLAEFMPDLPLGVKVGYGSRFTTTAKNFKLDLENNTKYHLDINNVDQYVRDVYVPCSTYDEVRRMFGWV