Scaffold Ga0209296_1011384

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1011384
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5321
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004723	Metagenome / Metatranscriptome	426	Y
F038674	Metagenome / Metatranscriptome	165	Y
F075864	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_101138412	F038674	N/A	TKAEETPQPPKDLSLSREVLRIDENGDLCIGGSGNVGLGTSTPRTKLHVEGIVFHVNDRRLEMAGDENGDFKIHWLDPKENETVNAILIPKPKDDPWKTNSIAIH
Ga0209296_10113843	F075864	AGAAG	MTPDIDLIYKIPQEVKDAALLLGNYFKKQNIDNWALYDVCSRKSFYNLEDQVKNLETWKNKQVNGFID
Ga0209296_10113845	F004723	GGA	MKKSDKFIHTDIVGKKHEVIYTGTRRIVKDCEFEFFVDDKGDSRFFTDAEVKKMKKVDCATEIL