Scaffold Ga0209296_1011371

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1011371
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5328
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015354	Metagenome / Metatranscriptome	255	Y
F026825	Metagenome / Metatranscriptome	196	N
F029798	Metagenome / Metatranscriptome	187	N
F038648	Metagenome / Metatranscriptome	165	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10113711	F038648	GGAG	MPVFTLPKGVEVPENLAEGEAFQTMATILLGKNGKAEVIEIDGIAIPGYEKKSKGKKLADAQEDAAEGGEEAGSMSRGGGKQGFIAEVMQRGAGPMS
Ga0209296_10113713	F029798	N/A	MANISCTKAAELIAEAQGASCKSPRERILLEIGLLWEAATLGGTADITADNTVISADSTIITADMTEFL
Ga0209296_10113717	F026825	N/A	MTDHHTFFRDISIGVGGPIIGILGNAVLSDPHLKTASLGLGALAALLTCAVKALELYRKLKNEK
Ga0209296_10113718	F015354	N/A	MNSNLSSLIRHFLTAAGGFLVAKGLASADQVAELAGAVVSIAGVGWSVYNNKKAAKDSPNVIKAE