NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1010874

Scaffold Ga0209296_1010874


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1010874 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5473
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002433Metagenome / Metatranscriptome559Y
F005503Metagenome / Metatranscriptome398Y
F007799Metagenome344N
F011152Metagenome294Y
F028163Metagenome192N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_101087410F011152N/AMTISAADEWAIHKRAVDVVFSYSGQLGTTIRYNSKLNNHEQVSEYAESLGAEMIVARYFGLDYDINLSNGKRGADVGQGLEVRWTSYVGGNLIVYPNDRETDIAVLVVGKSPVYHIAGWLPVAFARRKRFKNPRQDSWWVDQANLNPIETLVRSEYATAAI
Ga0209296_10108746F002433N/AVSVGEWTAVGGLVLAVLTAIYSSMRFMVKSIMRELSPNGGNSLKDQVSRIEARLDQLLLEIAIKK
Ga0209296_10108747F005503GGAGMTSGEIGLFLFMCLACILWSIMSYTMGYKEGHKDGYQRGRAVGRHASSQAVAK
Ga0209296_10108748F007799AGGCGGVSFLDNYEDVAARIQRFWATHKDGKIHTSIMDINLEKGYVLVECRVYRHYDDQEPAGIDYAFGNVNTYNVQMKKWFVEDTVTSAIGRCVGLVLGADKRPTVQNMQQVERIDPKIVQDSAVAYDYWSTKHGDVPSFKTREEAEEAGIPTLGIAMEIIKENLGGVQVAAAPLCSHGHMIWREGTSAKTNKGWGGYMCSEKVKAKQCAPAWYMLGSDGQWRPQV
Ga0209296_10108749F028163N/AMSRVTEMIDVDTMIGRTLIDGKIVAEFKCGQCDNCQRIEILDRTGYQRDVSGEPILWFCGQCRK
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