Scaffold Ga0209296_1010259

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1010259
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5651
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011646	Metagenome / Metatranscriptome	288	Y
F022400	Metagenome	214	Y
F029021	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_101025912	F011646	GGAGG	MSNVLELRNGSVKRIIFYEVSDAQNIAIWGGESALEALKWYRNSPNGSKIYVQEWLTDEEDAKQVSSQIEITPIVLSTIANCMDRWV
Ga0209296_101025914	F022400	AGG	MRKTAIERSQRPTLRLVSGGREESGPALSLFGPLKVGLITMQKTNEDQVLTELLNSLERKIVELSIRSCEVLNIFLSDTEHLAKQKVSFSSIDITNE
Ga0209296_10102597	F006842	GGAG	MSYTPVICGDHLVPISECDCVNYLKELETSAKRLVQLAKEREEMK
Ga0209296_10102599	F029021	GGAGG	MNICQFCGWEIARVDWYHRYNGKLICDNCVMDTMSEREK