Scaffold Ga0209296_1009978

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1009978
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5739
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F002135	Metagenome / Metatranscriptome	590	Y
F006539	Metagenome / Metatranscriptome	370	Y
F051910	Metagenome	143	Y
F053297	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10099781	F000468	AGTAGG	MTAWSPVWKLTVAGTEYTNIAISDIQHQAGRTDIYQQPNPSYIQVSFVALSGQTLPFAINDSFVLQVKNTSGTYVNIFGGDITDITVSVGATGSVATVVQYTVLAMGSLVKLSKELYSGTLSQDEDGDQIYALLSSVLLGTWTDVPAASTWATYSATETWADAVNLGLGEIDQPGLYTMENRAADVDTIFNIAQLIANSAFGYLYEDNEGNIGYADADHRQNYLLTNGYVDLDARQALGQGLSTITRSGDIRNDVFINYGNNFGSQKTATSTSSIATYGYKGESINSVLHDATDAQAVADRYIAQRAFPQPAFQSITFPITNPDIDNSDRDNLLGVFMGQPLNIQNLPAQISSGVFEGYVEGWSWSTRFNELFLTINLSPVAYSQVAMRWNTTPITEAWNTLSPTLTWEYATIVS
Ga0209296_100997810	F006539	GGAG	MIETTAPWIVLYCILGYFIGWGIYSTIKDNAFQSGYWKGRKDGYDMHRRITDAKRDQVFDYDKN
Ga0209296_100997812	F051910	GGAGG	MAFNLEDYEDVATLNKWFIQNFPLGRSDISVISHDPEKGYILVQATLWRDAKDASPAVSNIAFGSRETYIPNMKKFYCEDTATSSLGRAIILLKGSDKTATKDDMRKVENAPVRNLYGKSGNSQTIETALRKAFNDDDKPTDPKAWSVGEVVETITQNKPKQQECSH
Ga0209296_10099783	F053297	GGAG	MANTKPQITVINVETGEEIIRDANADEIAQIKLDAANDEARKVEAEAKAIAKAAILDRLGLSADELQTILG
Ga0209296_10099787	F002135	N/A	MANTRKSSKRKKINRRIVRRSPDPLTKLDQWYIAKHEMFRAARKAGFSESVALYLMDSPESMPDWIVGDTGIIPVIPTPDEDED