Scaffold Ga0209296_1008436

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1008436
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6320
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000714	Metagenome / Metatranscriptome	924	Y
F002071	Metagenome / Metatranscriptome	596	Y
F003663	Metagenome / Metatranscriptome	474	Y
F005177	Metagenome / Metatranscriptome	409	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100843613	F000714	GAGG	MEDTNYGATVTPVVPESYNANLLVTYKVIRGYSDAEYTTDKVSSIEWDLHNGREYNKRVTEFNNKIDTVKEIISEAYPDSEDQDTLRAIAEALDIELTRTVEFTATVEVTGTVEIDLLANYGTDVESEVTENLYVETQSGNIQVDEQYVTNVREC
Ga0209296_10084364	F003663	AGG	MLSTAIGILDATKDSIFDEEIMGLAGELHERRNELSDETFAKYLFMYSTALSSKVADLVTKVCLTKEEMSDLCATIDEMDNLSETILEENN
Ga0209296_10084366	F002071	AGGA	MTNSTLEVGTTYTTTQSGITGIIKSVDTLPNGTSRILLDVEGKDRWTSATAN
Ga0209296_10084369	F005177	AGGA	MKNRYRVEIYDENKLNDLTIYSEQGVDKEYLTELVFSNLRRFNGTIRAYVYDNLKKKKTTALLLPTEFIPKKTKLTKLLG