NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1007952

Scaffold Ga0209296_1007952


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1007952 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6562
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (46.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011754Metagenome / Metatranscriptome287Y
F012023Metagenome / Metatranscriptome284Y
F014503Metagenome / Metatranscriptome262Y
F019433Metagenome229Y
F042301Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100795216F012023AGGAMEQIDYTKLNERIVEQAYENVLTKEQFQKLIQNKLDRAAMYHQALAKAPTFSVN
Ga0209296_100795221F042301AGGAGGMVKEGSKWTGTGGNDKFHVIHVIELDGHTWVHYIKENAQAHELTREYSCYLESFLQRFRPIPE
Ga0209296_100795222F011754N/AMKIGFSLGRCVRDIVNGSVNINDVAFIIAATSIHDEPQLANIIEQYMYRDDDYLYGLDQEQCQAVALDLWAANKILQPRRQGMHRHRQPENAVWVDMFPTVLSDNHSVKTAWDSYRLMIHMVENVDTDALETFK
Ga0209296_100795224F014503N/AMKTVVNYWRFDDGTKPINPGNRFGETCVPRGWYCWVYPEDDFEFEEWMKRMCPTADVTHRFNSGDPMWTVYIHDDTEVTLFQLKWL
Ga0209296_100795228F019433N/ARARATFPYRVNFSEIKLAQVEEMAVWCITNCRGLWREEHYHALYFQFEDDYDAMMFMLKFGSSEGTKLK
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