NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1007851

Scaffold Ga0209296_1007851


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1007851 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6604
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008302Metagenome / Metatranscriptome335Y
F017479Metagenome / Metatranscriptome240Y
F034926Metagenome / Metatranscriptome173N
F063695Metagenome129N
F084227Metagenome / Metatranscriptome112N
F085703Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100785113F017479AGGAGMNELKTAAGSWARAFLVAVISMAAAGVSDPKALIAAGVASILPPVLRYLNANDPAMGIKK
Ga0209296_100785117F008302N/ASGLGQVYENNVGNVCFDDADHRSNYLAANGYTFLDGDFAVPTTIKSTTAISRIRNSLIYKYGASYGSTYTTSDADSIAVYGLYERSTDSNIKSLTDITDIANRQLNLRRSPRNQLEAITFRLTNDNIPTAMLNSLISIFFGQPVLINNLPSNLLGGTFDGFVENITMRANPNYVDLTLYITATDLSLSTTQWDTVIPSTIDWASVNATLTWNNATGVLS
Ga0209296_10078514F034926GAGMGYVEVYNIDKDGEWQDLNDIPFITTVNCQLCNEPTEAHDIILTARIVDGEVVAGTWQCRKCNTVNG
Ga0209296_10078517F084227N/AMIGLLLASNFIWYWQGFKDGRREGYVRGRDLSRQGFWQE
Ga0209296_10078518F085703GGCGGMAAIEIYGAPVVERYYCLYCSFDMTATMVCLDCNEYKSAVTLQEFIEFNGHYPKLRAVK
Ga0209296_10078519F063695AGGMKITAKDFDALTDTAMGWKGNDWEVQADRFLDKVSFDWAVCYWVDSAASLILARTYLEDNDHAFEESYDDNMESYILLTNYDMYEMAVA
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