Scaffold Ga0209296_1007803

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1007803
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6627
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003786	Metagenome / Metatranscriptome	468	N
F008078	Metagenome / Metatranscriptome	339	Y
F038230	Metagenome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100780310	F003786	N/A	MSNLTQYQPRNSDEQAIITARSNRIANMEQKDAYKQTLNVISSVFPMYGIDGDLSFYANIAKEIVKTFGQIATNEIEIAFRMFSAETLELDDDVKFYGKANMHTIGKILNGYMSYRRKIIASHDNEVAALRHQVQMEERGRIEREKLYAEFPTMIKEFTGKTWEDVPLYWYDMCLKFDMITYEEGEKRALWDEAQAIALKEPPESLDLMTIRSHAKIIEQGNMKRAVVIAQKLAVWRKVIKKVK
Ga0209296_10078038	F008078	N/A	MKQTPKEKAKELFDHYYILIQDIGGELGQEILVSILAKHCALFAAREVLKEKWNIEVEGSYDEYYYWEEVEYEIENYEE
Ga0209296_10078039	F038230	N/A	MKNKQDRNAYMREYMKKYRATMNEYTYKKIRERENLRLRAKYHAMSREQRQKYIEYQRSYHKLKQFTNE