Scaffold Ga0209296_1007746

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1007746
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6655
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F001562	Metagenome / Metatranscriptome	670	Y
F005177	Metagenome / Metatranscriptome	409	Y
F013527	Metagenome / Metatranscriptome	270	Y
F015208	Metagenome / Metatranscriptome	256	Y
F017995	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100774614	F013527	AGG	MKTFQFLTYIDVEAENYDEAIDVFQFQLKYGINKDNVYVADITDLTIESVEV
Ga0209296_100774615	F015208	N/A	MYKITCTYDEATTPYVSLQFSDALQAFEEFAKFVDWGFADKYSTVNLSLPNGKMYTRIFYREGRKVITK
Ga0209296_100774616	F017995	GAG	MKQYIEIIAAECDECGGAGFIFFGDEKNYDVETCDCVAEVADELTVDWVNN
Ga0209296_100774617	F000447	AGG	MGYIEIFRLNEQGAGWVDLSEATPDELFNIELGLLNEGALFNKPEAD
Ga0209296_100774619	F001562	GGGGG	MSKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHQDYLEELEN
Ga0209296_10077464	F005177	AGGA	MKNRYRIEIYDEVKANDLTLYSEQGVDKQYLTELVFSNMRRFNGNIRAFVYDTLKKKKTTALIIPMDVIPKRTEATKLM