Scaffold Ga0209296_1007505

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1007505
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6783
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016369	Metagenome	247	Y
F025652	Metagenome	200	N
F055439	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10075051	F055439	N/A	TEQVDPYIELIEKELIKLYPELKDREDNALNWAYDIINADSTAEVVETLDRIKQIFEEEYKEKWVCCICGKNTYNVDCEYLAGVDHLSCLTTEELKKSNPLKNKDELSEVKNQFVNMKMYIKQLEEHIQRLEKQYDEPTN
Ga0209296_10075056	F025652	N/A	MNNKTYFYRVAHKKYSWNGRYPMGPYAFFNESRFLLNIQKVPFSGCAYEKFVEFTSKEIVEYKKFNINNFNLKWVTTLPNAWRPGPFEDIDLREKMILRMGTMTKNGKFHLYGFDSLMQASKWYNNQEELQFLEDNEFRMYKFQIKSKNLIMGKTQSVYFPDINDDMDMLWISSTKLSDLNKSVNINNTTQTINKL
Ga0209296_10075059	F016369	N/A	VKNNKAFTLIELVLAITILLGIIGAVVINYDSLVGNSKYFEARENLKTYLINLKHQSAFQQKQFELTFDPDYNMYSSFEDFYLLEAVTNDLKILDTSATKIVFFLDGSVQESYIVTSNLEGTITNTFIINVIGSVNYEGNTNIVIEKKESDIE