NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1006519

Scaffold Ga0209296_1006519


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1006519 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7343
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (96.15%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F009334Metagenome / Metatranscriptome319Y
F010227Metagenome / Metatranscriptome306Y
F020008Metagenome / Metatranscriptome226Y
F062427Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100651913F000652AGGAMKTAMVTTILRQEIQVPDDWEREDVLDFLGEFQSFRTAFQGVSNEDQTARIVDLCVVEEEITELGDVAYDN
Ga0209296_100651915F009334AGGAGMYATVEGQQIKVGDYVCFKSDVEQCGKVVAIKKSYMGTALTLENESGFSGGYIGGQTRTVEEASDCWVE
Ga0209296_100651920F010227AGGAGMQATTFNVSDKLTLASTDTDEDSVSTTYNCNVEVQLAGDSIWDCELEAVTITSIHISETDWGDGDTSIHIAVCYSVDGFDDGEALEGSWRIYTDSGFEAAVSELLGTDVTFTEQGMQDDGYASMEL
Ga0209296_100651921F062427AGGAMKNTIKRINKAFSKLYAMGDSGLDYLDKHYAVDAALIQHFYDETLDTLTKAQLSELAEQLEEVASDAEFDLETI
Ga0209296_100651922F020008AGGAMGIYASTVNAFAESAARAKVYTMQNRLQSYGQTAQQLNVSTAKFRRDIEAKKVKFIAKLEKERVVKLQQELASLQAKHTQ
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