NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209296_1006423

Scaffold Ga0209296_1006423


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1006423 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7412
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (21.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012669Metagenome / Metatranscriptome278Y
F015867Metagenome / Metatranscriptome251N
F058129Metagenome135N
F088880Metagenome109N
F093750Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100642310F088880AGGAGGMRIQTENVMFVLFIVGGIACGIYIVSNNNTIKVIDGCQYLKNYNGRGWNLTHKGNCTNIIHYKK
Ga0209296_100642319F093750N/AMPDNVQKRFLEQLVNGKNNMKFKVSYYDFDTDKYVTKECYRMSFYDGVFEFMPVDNPIKIYKSIIIDHPIFSVSQNNTGFISISVVGYQWMKNGGYDKTTTKIENVRETAQY
Ga0209296_100642323F012669N/AMSEQTYINLKDAVKRPIFDVKNINRENPRFKQMVDSYQKWNQDDYFTEHRSTYENDIIECLERHNLDGFALAQHLSEYKYIEPDSELVHILEDVTFVKSSLETEMLSQWVKENFLTIPDDVVGKNVNVKQGIRKYENHYITGIKPETYQVTVSDKIDKNGGY
Ga0209296_10064235F015867GAGMKYKVTYYDYDSDKYLTKDLYWMASYRGSFDFVPVSDGPKENWKGFSISGSGVNIFYNDKGMNITVDGFQEMKSGGYGKTTTVIQSVN
Ga0209296_10064237F058129N/AMNVYLVYNNSDRDGGVNAIFDTDRKALDFVIKEYYSAHYFKSMDSYSLDKLAREYVVEMKVL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.