Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1006210 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1006210 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7557
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (95.45%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

7557

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (95.45%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F004110	Metagenome	452	Y
F020167	Metagenome	225	Y
F038999	Metagenome	164	Y
F059896	Metagenome	133	Y
F093483	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100621012	F003212	GAGG	MKDKWLVTIEIDTYDGDPRYWDWDAIFVGEDDITVVSSDFKGRVLPTSEGESNE
Ga0209296_100621016	F020167	GAGG	METISELVNEIYEDNYSHLEFDEAMGGDCDCIVHNTLNTIVKYWHEKEGE
Ga0209296_100621018	F093483	AGGCGG	MVAERVAHSGAIIVSALVYQQGLRWLESSTYYGYTVREAKRSFRESCARLNYEIERG
Ga0209296_100621020	F059896	AGGCGG	MNSCDKCELMARVTVSGYLFPRYLCALHAAQLCESVGDQAGADKFAALIAGDRVSA
Ga0209296_100621021	F038999	AGGAG	MTKSLEQGTKLSFPCSCNGCRNYPTRPAEIWHESQIASKAQGYFFTPDTMRFFKSRIADFKPVGISPRGVDSLMVIVSNKRDDDPRTYEIVTLCPYGELGREWAADNTGEPITNYASLNKARKSARWNCTIAPQLCECHGCQLDKAGR
Ga0209296_10062103	F004110	AGGA	VTELHPIIYDLVPSVANTIHRRYNKHVEKDDIKQELMAWAMTRVEDHTIDLMEPIEERRRHNEQRIAWQMKRAGERYARKEKAAKSGYQTNDEVYYQSATLGQLLPFVIASVIDGTVLEQAQEMIRDGQPKGSSSPAEGGNLLANLIDIKNGFLKLHQEDQALLRMRHHESFTLQQIAQVLECAISTADRRCEQALRRLQDNLGGVSPWQ
Ga0209296_10062107	F003863	GGAGG	MESKEVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWVIAGDSKLTIAVHTRANAVPDVAGRTDYESADESNNGGEA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1006210

Overview

Ecosystem & Geography

Associated Families

Sequences