Scaffold Ga0209296_1005428

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1005428
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8160
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura atramentaria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008023	Metagenome / Metatranscriptome	340	Y
F089937	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10054282	F089937	GGAGG	VATISSLADRLRSEIGDIGKSFVYQFTADGITDRYLVPYSPLDGAGLIVYLNGLDVSSTVAVEEQTGYIVFDDLPTEGDTVVVAGNYFRYFTSAEICDYVSTAFEQHSAYHTDAYGRTVSIMNLPTLEEYPVVIYASTLAMYALATDASFDIDITAPDGVMIPRSERYRQLMQMIEVRKQQYRELCSQLGIGLYKIDVFTFRRISKTTNHYIPIYEPQEIDDRSTPVRVHLPIPTYGNVELPVTTVVQDLYIYEGDAYEFSIVLDFEVDDYTPLAQIRSVPGTAIVTTEFTVTKPDVGTADGVGLRTLNLALTGDQTRLLPGTSYYDVQLTNLDNVTHTYVSGKIFKTAETSL
Ga0209296_10054283	F008023	AGGAG	VANTQTSPLDATGRAAEAATKKNQAELKKRKDEISIASQIEAESLENDVFDPKKPDAPLVLDEIENIGVGTANDMVVIRTITDIEDMTYGVGNTYTFKAGVKYRVPANFAAYLEELGYIWRPN