Scaffold Ga0209296_1005216

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1005216
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8353
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (88.46%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F002515	Metagenome / Metatranscriptome	552	Y
F005531	Metagenome / Metatranscriptome	397	Y
F011386	Metagenome / Metatranscriptome	291	Y
F017133	Metagenome / Metatranscriptome	242	Y
F025743	Metagenome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100521612	F000808	AGAAGG	MEYNYSLTASYDGVLYFTMRTADLMEAVDAWTKCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGEVKVK
Ga0209296_100521617	F017133	GAG	MASNWTTFAKATHYPTGMMNTCPCGQVVLAPALYHEGETYWENPNKCKELFEENK
Ga0209296_100521624	F005531	AGGAGG	MTITYTLWQGSQLLAVNQKANKPEEILAVIAELNKLGKGFTYKIREVETK
Ga0209296_100521625	F011386	GAGG	MKVTLTSMQGNTRNIELMTKQEVLDFIDLFKTTLHANQRIKITCDLLGIDGYVQGVS
Ga0209296_10052166	F002515	N/A	MSTRKSPEELRRLIELRRSNAASAVPSKKVYSRKGKKSQSLMLELSKESE
Ga0209296_10052168	F025743	AGGAG	MTATMETMQFVYADLLTPAQLMPGDLINIDDDIVEVLSVIDDARGDNYTITHRNDFGETDETHCTFEDMFKLYVFIDNE