Scaffold Ga0209296_1005206

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1005206
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8363
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F003456	Metagenome / Metatranscriptome	485	Y
F006653	Metagenome / Metatranscriptome	367	Y
F009331	Metagenome / Metatranscriptome	319	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100520612	F006653	GGAG	MSEPLVNKYRDNLRIDALRDAGNVLREEVDALKVDLTNFVGALLQSGIFELVKDEEGNIIYKINKAVLVDESVQQD
Ga0209296_100520613	F003456	N/A	MSQYNKTKGSKFETDVMKWLRDKGVSCERLSKAGAKDEGDLCAVIAGETFILELKNRAALALPEFWREAEVEALNYAKARGKGEVPLHYVIVKRRNSSIENAWVIESLDQWLKGKQ
Ga0209296_100520617	F009331	AGGAGG	MMCQNCIEGGAENKLGHLKRAAHKHEKCDMKGCVCQHRTGPGYVKRADTKVPLMQ
Ga0209296_10052064	F001094	AGGAG	MDKKLQAMFATYLRAGIASVIALFLAGVTDPKALAMAGIAAIAGPLLKALDPKAAEFGRGSK