Scaffold Ga0209296_1005026

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1005026
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8546
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F014250	Metagenome / Metatranscriptome	264	Y
F047650	Metagenome / Metatranscriptome	149	Y
F071228	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100502610	F071228	AGGA	MEDTYGATVTPAVPATYNPSALVQYKFIEGENVTYPIAKVTDLEWDLEQGRRSRDNFNELKGTVNELEELLVELYNPNYTKEEALQQIAELFGFELSKTVTITGTINFEVIMQVPLDEVEDFDAHYKLGDELSLTSYNGDVEVNDWSIESTDVDWN
Ga0209296_100502613	F047650	AGG	MAEDVSPVYYCDSCSVARASYLIKLLDGELAFCRHHYNKSKKALDEKAYEVVELNKTEESPKLREMAE
Ga0209296_100502614	F000450	GGCGG	MGDRANFGFVQPNGQTIVLYGHWAGHQMLGKLADAVIAARPRWNDSSYATRIAISNIIADQWNMETGWGLYVNEIGDNEHKIAIIDWDQQTFSLHEHTDARDPLNKVRGMNNKALFTMDLTSFCEKYALERLLVV
Ga0209296_100502618	F014250	GGAGG	MSYKDTLLEPRLQKLVDLGESGTDILHGELKNLMLEAETQLDYATKAEEESEEAMDSMERRYWEGQLDALTECYILTYNLTFAINERIISRG