Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1004759 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1004759 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8834
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8834

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (73.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003134	Metagenome / Metatranscriptome	505	Y
F005697	Metagenome / Metatranscriptome	392	Y
F024931	Metagenome	204	N
F025683	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100475911	F025683	GGAG	MVFDLLDPATLGSLSMLAILLVMAAAVGYAKGFKDGKREGIARRKAITRHIANKAVK
Ga0209296_100475912	F005697	AGGCGG	MGFLDNYEASRERLERWLATYPNGRIETRIVEFNAEKGYVLVEARAFKGKLHETDCHICHGLVEAPAGIDYAYGYQAAYQPNMRRWFVEDTTTSAIMRVQQLVMGGAERTVREVMEQVENTPAKIANADKDHDYWTTKFGDVPSYATAEAAEQSGIPSLGSSMDEIKKQLGGELVAEAPQCRHGHRVWRTGTAKTGKNWANYSCVGRKPDQCEPVWYVFTSDGTWKPQL
Ga0209296_100475914	F024931	GGTGG	MQLTRAEEIECLKAAIQFSIDGGNEANDAARYNTEIGFFDYIAEWAETIGSEWVVAKYLGVSYDPHEPKYKVKADVGNGIEVKWTKYVAGQLIVHEYDRTTDIAVLVTGKSPHYFIAGWIPVAIAKKPRYRHSKQPNWWVTQINLQPIENLRKSTYGQIAI
Ga0209296_10047595	F003134	GGA	MTNWSPVWKIEIDGVAYTMAVLANLSITSGRTNIYEQAQAGFATIQLLDVNQTAIPVSINSTLSVEIKDTSGTYVPIFGGNVVDIGLEVRDVGSTMFTQTYSITALGALARLPKVIFTDALARDYDGDQIYEVLSQVLFGQWQQVAGALTWATYPATTTWAMAENNGLGEIDRPGNYDLAARGSGQDPIDIYSLVSALATSGLGYLYEDAQGRIGYADSTHRTNYLAANGYVDIDANQARAKGLKIATRAGDVRNAITIKYGATSSSDVSASDANSIAVYGNLAQIITTTLHDATDANAQANFYLSLRAQPEPIFRSMTFDLTNPELDNTDRDALINVFMGQPLAIVNLPLNMNSGAFQGFVEGWSFSASYNQLSLTLLLSPLAYSLQAMRWNDVPITEKWNTVSPTLNWESATIVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1004759

Overview

Ecosystem & Geography

Associated Families

Sequences