Scaffold Ga0209296_1004489

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1004489
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9177
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012971	Metagenome	275	Y
F016392	Metagenome	247	Y
F078387	Metagenome	116	Y
F082348	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100448910	F078387	AGG	MTREEAHRILDTQKDGTRLHPVVKVTQALWTTGDIASSLPTHARPFDSDGINEWLESLCVGQSERTGESSSRDLSGNQSGIDQKDEGNQ
Ga0209296_100448912	F082348	N/A	MPRPPSDITGTQIQIAVRVTQALKDEFQSMGGAMWLRKLLANQIEQRRKLEAEFKTPKK
Ga0209296_100448916	F016392	AGCAGG	MKTAFDYKDQPSIWLTDTKMKRFKQGEEYAKKKQDSRDINDKNQVFIYSKALSRKK
Ga0209296_100448917	F012971	AGGAG	MFDLEKESWMALQDLNSEDVADAICDSDAIVEAIQSSAWTDVADIIRARVELKAKRLAQVALDLPLTPWVDSEEELNLWRCYRIERQQAALEDRKVKTKINPYSKSEVNNED