Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1004430 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1004430 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9254
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (18.18%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9254

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (18.18%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047677	Metagenome / Metatranscriptome	149	N
F066778	Metagenome / Metatranscriptome	126	Y
F070109	Metagenome / Metatranscriptome	123	Y
F072341	Metagenome / Metatranscriptome	121	N
F077297	Metagenome / Metatranscriptome	117	Y
F084221	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100443012	F066778	N/A	MNYSREPNWQKLKPEIDWDEQEEKLANKLENYINQNKQTVMNQQIIKQQKFVRTWNGPSGDIYYFDLVMDNGEIGQIGVKDMNSPKIQVGATLHYTVEERTGPTGKKTTNFKMQNPMQYPGTTAVPSSSGNSSANSAGISAPYYRKESPDVQNSISKSVALNNAVLFCKEQKGSKPGDVLDTAEIFLAWLKGEAVEAVQIKAVTNESADDEMPF
Ga0209296_100443018	F070109	N/A	VRDTLVSLTTSEVRSLLKLKAERDYLKGQVVILSKSDSIASFVIKDQQKSIVAWAVTNEKTSQELLKAQEQLYKETARKESWRNTALIGIPISFVGGIIFTILF
Ga0209296_100443019	F077297	N/A	MTQPTREQIKLAVVFSAAVFICILMQGMYIRIKEDEKALDYYERRADRATHVIDSLEATNVQRMQEIAQLNVQLERNTKIYEANISAIDSLDRNGLRRAMQSLLASLAGERYPGQSND
Ga0209296_100443020	F047677	N/A	MKWLKSIFSNEGDASSKRVASIIALLVCINLSYIGTFTDYKCPEYMFDGLLILAGSGLGLTVIESIFAKNKSDDTTNEGTN
Ga0209296_100443021	F084221	N/A	MSNSQQQIAEGVTGTVSSILLSVPAWMLDIEFALKIFCLMLSAVASIYTIYKMRKKR
Ga0209296_10044307	F072341	N/A	MSKELAASVQQSFNRSLSAEEKNIVECVSSPKLHSLSEQEFRELIAQAAVINSIKALPSDIEVTLLQQLTQNTYRSTSIKDWQNAFLYNAIGKDFERVEAFNLFSISFMADVLKRYEEYKAKVWRELNKALILPEAEIKRAEPTDPVNVLHADVERWNQRKEIWVEISAPYNCQRLFKNGIYKKSMWEPEVWARFEDIAKQKVEAKFKASNKVILGESAQAEFDGLQKIELSRLIYIDIIKQINKEKE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1004430

Overview

Ecosystem & Geography

Associated Families

Sequences