Scaffold Ga0209296_1004376

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1004376
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9314
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024744	Metagenome	204	Y
F036200	Metagenome	170	Y
F053994	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100437620	F036200	AGGTGG	MNKPLEWKELWDAMDANPSEWIPTTEAMYWQMLEVLPPIKMLGENFLVGEANDHNENGEAEYACFTKFGDTYKAKHLTVKEFMAEHGYIPAKELR
Ga0209296_10043766	F024744	GAGG	VSEVQQAQQLQMSQDSMNKAGNSINYAVNLVNMSLQQLWNIAYQAGYEDAMEIVKTDQGTKQ
Ga0209296_10043768	F053994	GGAGG	MNSVVSGLQHISKVFVKTDTESLRTWLMKTARSTPSTHSTERIYMATNNPHKEMPGSGVMYWEDEEMRKSPKGPDFKGFLVLECDYKAGEKLKIAAWQKPTSRGNSLLALKEDNWSKKKREEEMKDKEVPSRYTPRPSRSNDDDVPF