Scaffold Ga0209296_1004219

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1004219
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9515
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F001538	Metagenome / Metatranscriptome	674	Y
F012435	Metagenome / Metatranscriptome	280	Y
F065786	Metagenome	127	Y
F073255	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100421910	F000332	N/A	MRWLILLLLLGLVGAVAKNGCHVREFYGIAYTIHDPTQRHKEMMAWLDQNAGHCKSTDYTVIWNNLAEWAGSADSTFLRAKVVHGYKDALEREKK
Ga0209296_100421911	F012435	N/A	MAEIDLVKYGVLWQKVESMEAKIDKMEAQLDTLIELANKGRGGFWMGMALVSGVSSIFGYISHYWSK
Ga0209296_10042195	F065786	N/A	MTKDDLVNLLRITGAQETAIDVVCAAYDAGWNDALDDYSKRIVVLPFGKDTIDSFGSFIKEAKK
Ga0209296_10042198	F073255	GGA	MYDQKTDTQTSKASVNGHQGQANLVGYADGQLHPVHLCFGYGHQLYAWPLGQRSGQRRNLQNDFTRFFYTYRRHDWIPEWYQTHAE
Ga0209296_10042199	F001538	GAG	MIDTIKLFPTVQPSGYPDKHDLVQKKLERQHEMNKANELAKQQQTQLQDIGFEIYCKRSVQERLRMEIFLNRKLDIYV