Scaffold Ga0209296_1004209

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1004209
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9526
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.09%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002259	Metagenome / Metatranscriptome	577	Y
F003659	Metagenome / Metatranscriptome	474	Y
F006697	Metagenome / Metatranscriptome	366	Y
F008615	Metagenome / Metatranscriptome	330	N
F026828	Metagenome	196	Y
F036110	Metagenome / Metatranscriptome	170	N
F070805	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100420915	F003659	N/A	MPQTLTAADVVGRYLIAKKDVPVYDAPFGTRIGTIRKGNSTPEVYSYLVRQGQVFWVFDYTIPGQGPDAYYALQSPDAFSLSTVPGNVVIAPNVLPGVDVFPAGGTIKKYAIFGALGLLALLILKK
Ga0209296_100420918	F026828	N/A	MITEELISSAIAFLAGWILKRPDFVQKIISKIFTKK
Ga0209296_100420919	F036110	N/A	MEILLFAATVAVSLVGFLLARELNRTSEELKHLRQDVFRLSVDLAKLQTRLDEVI
Ga0209296_10042092	F070805	N/A	MYLQLAGLEPLNTAENPLAPGAKPYSYDKFYLGQGEDIILPDALYKTSPGGFVDALKKLKTLYQDFQDGKKPTPANVAARAATAAMPSGGVQRASTIQPLNGVTFAAVIGLLTQAIPYVVSILGSFTATVVNNSITNKYQQNAYNVQRLNNMNVNELNLQIQNLDRDIAATNRFNFIQLMALSQFRIVYQQRFDRISGYGLLSNLPGWVLPAALGLGAYLLLRRK
Ga0209296_100420920	F008615	N/A	MNTPNTFGAKMFNRFMRKGWHISFTDSYQDRVCVIPPERLDAKHLFGIYIPVMRHTWQPDLKREWWAALQDKNTMHGPTFEASAHPDDIERFAAFAAWIGDLLRNPEKFT
Ga0209296_10042096	F002259	N/A	MGMSAQDKMLNVASRLGLTTLKDMQGTTRMVYDSNTTAALTHTFFKGAAQRAFPVTNVGANGNQFQVNEALLVEKIGFFIPSDATGVGYAGLAGTSVKFDLVIGNKTVIKDASCEFGGEQSFYNDGTIGSSVIDLEGVGILIPPQVEYYVVAKTFATGARTASTVRLGCYLFGTGALLNFNTTI
Ga0209296_10042097	F006697	N/A	MANQVQKLSYVDNKLGVSLPGQQTTRVIYDSINATAGQQSFQFFTNFAGKTEFQTNLTTNKLDSAESMVIKSVQIIMNSATINLNDHLNLNITVGNQVVLKDFDPSFNSSNRGLAFDRLHSGFNDNQNLEFRLLTEIVIPPQVNFKAELVLGNALIALNDDITIVFKGYGRIFSAGNSF
Ga0209296_10042098	F000710	N/A	MASNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGILLSSTTSAAPATLVNATQLRVTLTINNDVVIDDVIAHDLGASVNGGVTTGFPAFVPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI