Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1003802 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1003802 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10171
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (76.92%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

10171

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (76.92%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F009531	Metagenome / Metatranscriptome	316	Y
F009882	Metagenome / Metatranscriptome	311	Y
F019320	Metagenome / Metatranscriptome	230	N
F021288	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10038021	F000808	AGGAG	MEYTYSLTTSYDGELIHTLRVSDMLEAVDAWTKCVDYGTAKEYATYNLSDLTGKMYTKTFYTNGEVVIK
Ga0209296_100380210	F009882	AGCAGG	MGSELQDAVTIDKLEVPYNPNLLVTYKAIAGTYAAPEEPTYLTSKVTEIEWDLHNGRTNKKSLQNLQGTVNSLEDLIVEWYDPNYSKEDVLVALCQHFGIDPVKQIEVQGTVSFSGTISVPMSEIADFDLSSVTIDVDLSSYDYEADLNVDDVSLEDHY
Ga0209296_100380213	F009531	N/A	MTLNVEIYEMNYACSPGGVDCWEATIQGYGTSTTVSDFKTAGDALNYVIDKHPSEMLELTVTTLQTYEKVYS
Ga0209296_100380215	F021288	GGA	MLGYTQKDLADMTYGVWQADLLVNADENPAIHNYLVKAHDFLQGLWAEGYFDNAYDV
Ga0209296_100380218	F019320	GAGG	MHTLHWIAVKAESKQEAFDTVSLSLLPSDEGYRIADWTDWHVVGGGRWSETPYEDSQNMIISYAEQPDEFMKVLSDIKQYRIKYMNEKLVKLDSAFDKLKSDIVDYISNDCRLENDREFDFSRWEIKEAITMLSSEWTPDSGFYDHSEFTSKFQYLEERLDKPEEAKLHYLVPVDFHF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1003802

Overview

Ecosystem & Geography

Associated Families

Sequences