NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1003602

Scaffold Ga0209296_1003602


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1003602 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10511
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (88.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002052Metagenome / Metatranscriptome599Y
F021758Metagenome / Metatranscriptome217Y
F057112Metagenome136N
F096603Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100360211F002052AGGAMTRKYEFKFTIECASNGTPDMDRIEHMIDLNMQDLVFDDEFIAALDEKESVSIQVVPQFGKPNS
Ga0209296_100360212F021758N/AMKVIKLDRRYSGYGTWTHRTNGGHWYGEDARAQGLVAFYDMRCYMTQMNGVGCFIHEAWALKKAGRAVPEWAWDIDGNVFFRESALVNFTLAKERWL
Ga0209296_100360225F057112AGGAGMFTADQVWGLAVEADRINDGYLKDDKWEQVNDQARKVSDANKVMVKAWLRENRQPSAEDVEKGREYRKFFNGYTLKALMGNLSDFDRQALRIAQMDEFTGRNMLEFAIISCLPSSARREQERTELKRELFTSVQLDGNIGEVIRGDIEVVGCSFSSMYNKFKIKARMGEAFVDFWFGTPLDKGVTRTVQAKIKAVRGDKTTALNYVKIRG
Ga0209296_10036023F096603GGAGMEWLDQNLWGIALGVFIGGFIGFKAAEHIHTTIFKDILMKLKVTDADMKTMMRDLQQDLPEDHEDAMPRVLVKVECVNDQLFVYRLDTMEFLCQGADREAVLASLAKRFHKDFKIVLSEEHGAKYLKESPGV
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