NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1003358

Scaffold Ga0209296_1003358


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1003358 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10919
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027776Metagenome193Y
F039985Metagenome / Metatranscriptome162N
F044360Metagenome154Y
F052463Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100335816F027776GGTGGMNPLEIEIKKTVFAHLPAVGDFGILSRGDLATVLHTACTEAALAGWARGAESAEKRLVAELETLRGELKSLQTELAYAKAN
Ga0209296_10033585F052463GGAGGMPGNPKVRADIALLEDIDDELILSMFEEGRSKADICRGLGVGRRALDTWIADNDYEPIITRARVEAASHLACETLAIADGMDVDNGQRDVQRIRTRQWLAERWDRKTYGTDKAQAVNISIQGLRMEALRHVEVVEQLSTDATPKLSTE
Ga0209296_10033586F044360AGGAMASKKLLETDVYPSDHFKVFEHSLMVEMELAKMEHEKVYGIDRVIDLVDAEFRRKVNAQRERIWEASQARDEERLEKSIRGMIGAYKALTKWAVESGIKQMPTIDCMEHRMADGSLMVIVRNKQMATWYEQFRKAPGARSIWTLAELEVVMNNKTLSQVRGIKSAIPGTTMVPVTVQGSSGFEEMENDIDISKPFKGGKLFDTKAAERARNERTA
Ga0209296_10033589F039985AGGAMLNLSNNNGSGNSYIRFAPQANAWTNRDGEEIQIKKVVMDLDSVQTGWLMIGAGVRDWQPDEVLGAKSQSPGEGYKRGFVVTLYSKELGLVDWSANAYGPCKGFEKIYSEAAKAVDDNYGKLPVIEYVNSTAEKVGKGNTRVPNFKLAGWVARPAGMNAEGEDFVEPEPAPLPVRKVKPAPAPVMDDEEFF
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