Scaffold Ga0209296_1003264

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1003264
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11096
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002934	Metagenome / Metatranscriptome	519	Y
F004050	Metagenome / Metatranscriptome	455	Y
F005323	Metagenome / Metatranscriptome	404	N
F007223	Metagenome	355	Y
F025974	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100326410	F025974	GGAG	MPNPTRIEVNCTTGEVLEIELTDAEMAELAYQAELAADAKAEEDRIAAQRAADKAALLERLGITADEAALLLA
Ga0209296_100326412	F002934	AGGTGG	MNMKHPAIMSIGAFLAVWGTTSNFALDYRAILGSIVAGVFGYASPKK
Ga0209296_100326414	F004050	N/A	MAKKKVIDLDTYSQLDAWAISLHEMYRALRRAGFAIDMCLAIIADRDAYPDWILPSIPDRVDRLPYEDDDED
Ga0209296_100326416	F007223	AGG	MFDPSLGDAIVIMITAALYFHLGRIAGHRVGYLKGRKAVQAYYDKKEKVRV
Ga0209296_100326419	F005323	N/A	MATTESESVMGRLQFMNQDGEWESFPTEDEIHRSKEVIAILEEFTFTTRCCLCNDSIPYKDIKVNLTNKSWSCAKCHAVNGLTKP