Scaffold Ga0209296_1003183

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1003183
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11263
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (52.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F009134	Metagenome	322	Y
F010673	Metagenome	300	Y
F016253	Metagenome / Metatranscriptome	248	Y
F048938	Metagenome / Metatranscriptome	147	Y
F086598	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10031831	F009134	AGGCGG	MQTVCIEKKTQSLESLSVLVRSKLAADAASTLERIDSYELDGIKDESTREQILGSVAKRSALVFGWSEGNESASVSINLLGSMPDKLFHVEQSVNPV
Ga0209296_100318312	F002227	N/A	MKLTIQSKQNAQTIVDLFNAILTGEEAENGATPLSIYDDNKHICSLVAKDGTQILELIIEREEGDRLLQIGEVEELK
Ga0209296_100318314	F001964	GGAGG	MSRNLFGKPVYKVQISGAIGWSDLKERVVRHETVEFASRKDAEKAAKELNPGEYTQGRIRVVPVELGEDYDIYPVTERTKP
Ga0209296_100318316	F086598	N/A	METEKSSVLKDQLEKAATMFKRISESVDRIEKTLKEHERKIDEALKRSSCQDDDDDSAWEGFGPKPEKQPFNPNAETYTLEVSCGPQTIRRDDDEDDKTWAGRKKHLMNRRVLFLNSSGVVGTPEQEAYLKEIYDRLTAHGR
Ga0209296_100318319	F003748	N/A	MFSVNRKDAGGRYIDSEGDYTVTVSKVEETLDAKGREVCKVTFKTEDGASITDRFINQENVWFRVNQLVAATKHNVPDGTQVDFLGTKGSYAAFLKTMIGLELLITARSEEYQVNGETKKTLRIKNMREVPIAEVDGDDLDAKPF
Ga0209296_100318321	F016253	GGAGG	MKDSIKKIIDGGTGVYSISKQEAGEIHKAAKRVKNYEVSYWTRNKKRKEAK
Ga0209296_100318322	F048938	AGGAGG	MTREQTIEAIGIMQAFVDGKEVESMYNGVWSIIYVPRWNWDDTQYRIKPTAKLRPWTADEVPLGMQARNPQYPKTRWLIDGTSSTENRQDWLNKKYEHSIDGGKTWLPCGVMEEAK
Ga0209296_10031838	F010673	N/A	MNPKLIPVLEKLISRDVILQFFKPDNLPQSALAYIRHTYVMCRSLSWEEHDLIESLPALSDNRSESIRDAGGIGNPDSSVYHLFDDGSLWLKTNAYSSIWTDARDFAVEIILPRMTLSRMDAQLLRAIDMDDAVESVRADFYSSFAETLNRECGIPYSDAREHWNAYSRQLGDGAREETELGGSESGRAEGLRFAESFTINA