Scaffold Ga0209296_1002981

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1002981
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11735
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (48.57%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010746	Metagenome / Metatranscriptome	299	Y
F010897	Metagenome / Metatranscriptome	297	Y
F011914	Metagenome / Metatranscriptome	285	Y
F016115	Metagenome / Metatranscriptome	249	Y
F026210	Metagenome / Metatranscriptome	198	Y
F032572	Metagenome / Metatranscriptome	179	N
F035200	Metagenome / Metatranscriptome	172	Y
F035215	Metagenome / Metatranscriptome	172	N
F071966	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100298110	F016115	AGGA	MVGRDGDVAIYKKQLDEPDSEAYNYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWAFTCIDREDADKRFVQLKEKLSAYVATATMPNGEKRGRGRPRKIDLTKTESVLV
Ga0209296_100298114	F010897	N/A	MKLINSTFLCSDKLKEIIKWCMPEGVFLKDIRKIDFGNTKLNWHGRAWGSMRVHIGVPRYGKYLRPYNTGGRRGYLNVETYSWEEGLIELIAHELRHIYQWKKGKYYHGIKKIRKYNMGTRAKLCEVDASLYAKRKVREYRKGNYKLNLV
Ga0209296_100298116	F035215	AGGAGG	MKLRSQIVKEISDRIDEYKGLMIDHDNNQDAVNELESAVHELENLLEWINE
Ga0209296_100298120	F032572	GAG	MEMTNTYQYIENYISKPTYFCYVVDRVVNTNPYLFTGEYNKKLINKKVWVAKQVYPMCMPEQYTYFKTLKELKAALNRWGASWVRA
Ga0209296_100298129	F011914	N/A	MITNNQITALSENELTYLFYCLNTEWNSLNMGYEFDYYIMKAFKNNVIHKLLDKYSNNLTDENKGLIMQILNKLEQNK
Ga0209296_100298132	F071966	GAGG	MSLLGIEFDVKGYIFKPFYLVLGMLYFTILLALLGCLYMVLFIRNTLEIVLKDIEKNRNKYKNLK
Ga0209296_100298134	F026210	GAGG	MSNFVNANPLNYDAKYPQVAESANDDAKIFVMERNEGREVMFQIEDGTQYYGRIGYVPNSEHYCVVIDRNGTPWEWYVREEALRFVEDIGTKIG
Ga0209296_10029814	F007359	AGGA	MKLIKQNLGAHWVIGIKGKPEKIRQYHNRIYNWGGTSGNLKWMSHNFAYFWITMEKLERAMFKYVMSGVSDKLGKKFRGAKGGLKGVVMNRVKNTINNIPVEHFHKTAESQDFYSLGVISAEKLDTDS
Ga0209296_10029818	F035200	GGAGG	MTIKYIVLRDGIRVSEDMHTKMEDAEHEAEFWRKVIRSWPDGTKVTIKKIGG
Ga0209296_10029819	F010746	N/A	MTYKCAISGEAISPERVEALQVLGVPESQWTKKEYSQTKKLRAVYAGDDGSNDIVICDAVDGGSMFDNAVALEVENDN