Scaffold Ga0209296_1002882

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1002882
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11990
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005050	Metagenome / Metatranscriptome	413	Y
F025680	Metagenome	200	N
F057894	Metagenome	135	N
F059603	Metagenome	133	N
F065768	Metagenome	127	N
F070850	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10028821	F070850	N/A	MTEESTATTQSITPSTGVVLLAFGKVQYYWAAYNLAFSIRKHNPNINITVLFDDPIKGLSYCPDLMQYINNIGSIDADDIYTNKKLDPGKVKVNLYKYLPYDCNLYLDVDAIALKDIQPMIEELAQSGKDYISHCVGYHTIDKGRDFKEMQWAWADKMWAHFNLLESYVMPAINSSMQWIVKGSQSEALYRTAKDLYFNNPIPLKELRMKWGGGQPDELYMNVALAIHGIDPALKIYNKVEGSEGGMIHFSMQRGLSFDKITENYYLQSYYGGAGFTPRF
Ga0209296_100288214	F057894	N/A	MAANRWRSGYMRIQNDTFTGYLTPIGSVQDVEVTFKVKAMQKIMEASEDLQVEAPNEYLIGALRDNDAGYKTADVIIYNKVVRLKLTEEDIKRSKTLSL
Ga0209296_100288216	F059603	N/A	MNMTNEEKIIKTMNEYYPIEGKIVDGCVTYHSTQRTHESFRMHLMNANPQSIVYSYYLSRCAKWIKTLKLHNQKLIPIFVPNGTED
Ga0209296_10028822	F005050	N/A	MACVSYCDTSLLDHNLVNCNEYKLGGVSAIIIGACGTELVDPSNESEIEELLLGGVARMISDIRFALPAGSPITVDSPIGCGTSIRINEDRTATLYDANVTDENNTFWNDINNRRIAWILAYMCDSGKVIYITAPVGITTSANFILPEQNNELQRYEVTFSWRNKEIPAQYDAPPGIFG
Ga0209296_10028827	F025680	N/A	MKYIKGLKGRLRSLLGSKKTTHNLVEVFTHEGHTYYRFPKEVNLPLERFSMSMSLLERLSSGVSGSEMELILGEMEKALGAGLSNPKNAALIGAYIHVIRERQDTVIHRDILLNIAATWLVRDDEDPNIVNSDIHNFKLELFEQLSKGGAKDFFSSLGIDPLMPLLTMSPEDFQTLWEYNLVQQRNLKESLFRLNSHREQGRKKQATT
Ga0209296_10028829	F065768	GAG	MSVCSPCYDAGSYVNACLDTFSFGVVEAETLFIVWLQHNATKKIMQFEATSDDEGYITIEGIQIDPLQGYTIWVTDGAESYVQQDITVDGDIYKCLSFSAASVGQSPVVIP