Scaffold Ga0209296_1002555

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1002555
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12982
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (80.65%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002515	Metagenome / Metatranscriptome	552	Y
F007115	Metagenome / Metatranscriptome	357	Y
F020171	Metagenome / Metatranscriptome	225	Y
F021288	Metagenome / Metatranscriptome	219	Y
F021757	Metagenome	217	Y
F025743	Metagenome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100255511	F025743	N/A	MANMKLVYADLLQPSQLMEGDLINIDNDVVEIISIVDDATGDNFIVTHRNDFGEEEETAFTYEDMIKLYVFVDENY
Ga0209296_100255512	F002515	N/A	MKKTAEELRRLIELRRSNAASAVPNKKKYDRKKCQSLMLELKKESE
Ga0209296_100255520	F021288	AGG	MNDLNNMKYGVDSALLVLDSDEHPAIHNYLVTASDFLGGLWAEGYFND
Ga0209296_100255525	F020171	AGG	MTEMFTDTVAEHILGAMQQEIAEHLFEQWSQKNLDEGSDYAENQFMQFASDGLKQQYNEYYGYIEGDEFLL
Ga0209296_100255529	F007115	GGA	MMSRVTRLRVSKEEKVALSIGRLLSDFSLDLEAIGKYIATANPYVIYARAVEVLEAAEYNKTTAEYREIGKYYGNELF
Ga0209296_10025558	F021757	AGGTGG	MTRKDYVAVAEILSEFQDLIADQFTYEDLVNEFADFFSADNPNFKMEKFTHACGLTK