NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1002517

Scaffold Ga0209296_1002517


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1002517 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13126
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (88.46%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001531Metagenome / Metatranscriptome676Y
F050167Metagenome / Metatranscriptome145N
F052382Metagenome142N
F057118Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100251713F001531GGALDWDSIEKWDYIVTAVASEYHRKFPMVELEDIKQSLYQWFTEHPNKLKDWEAIGEKDAKNLIYRSLRNDALDYCQKWKAKSVGYDIADLHYYEPGMIETLLPSVLRGDYAVTHKLNLGFTGRPSAPAEGGNLMIMMLEIDSGYWKLGKDDRRIIFLRYAENLDFGEIANYLELGTDSAARMRLKRAIRRLVNKIGGYKPYNDVDSSAAELQEEED
Ga0209296_100251718F057118GAGGVESKQYRITIKTPATLVYYVSEYDIHKAIDLAIEAPYQEWEVSEFEMPLGSDVDAQEI
Ga0209296_100251721F050167GGAMKGNTMTTTARVYEDYLASISMTLADLADELATVQFEVDSINDYEPKGTILKALPDQTRFKPKSVWVSLGNGKYQHLTGEKGLIAKHSRLEGYTSVVFRP
Ga0209296_10025177F052382GGAMSSYGKRKGATFETGVVKWLRSRDILAERLTKAGAKDEGDVVAFLDGAANILELKATKKLDLPQFWREATVEAENYAKARGLKEVPYKFVIVKRRQAGIDKAWVVEDFEQWIKRAGK
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