Scaffold Ga0209296_1002442

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1002442
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13370
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003332	Metagenome	493	Y
F013413	Metagenome	271	N
F014620	Metagenome	261	N
F037730	Metagenome	167	Y
F095479	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10024421	F013413	N/A	VANGCMRSYSATTVLYHVQNINPNRKEKAMTENEYNETFDMQMEREHQLNLDRMRQFKLIGEQISKMPDASPKVLEIEVRYLMGIIGELETRIKDLESEARRLEMLLTRAN
Ga0209296_100244215	F003332	AGG	MAGTAVVQSGDYELEIDTGFLQDAFTLNSATMGVLDNTQFVLNGTTNFASVLNGCDNVTIKRGRQDIGDQFSAGTMAFTMLDTTGVFNPFNEDSPYWDATTEQPGLAPMRKVRFARYDTNNVKQYLFKGFVVNYDYNFALGGIDTVTVYCADDFYLLSQTYMAEFNVSEQLSSARITAVLNLPEVDFPIAQRAISTGTQTLGGSAAFTVDNGTSVQAYLAAINQAEQGRLFMSRTGNLTFQPRIGNTLSSSVADFHDDGTNIPYSGVGISFQADQVCNRASVTIRGSNNPQVANDAASQTLYFIQTQSITESLLHDNTAALSLANYLLEPEPIARYTSVETAFMSLTGLQRDQVAIIDIGQTITIEHTFTTGATTSELAQELAIEGVEHSISLSQGHSIALFTSPTVIVYEFILDDAIYGILNAGNVLG
Ga0209296_10024422	F014620	N/A	MFAPSIGLGGTFERPAINRDIVIIAREAKQTSVDAAIKAKPKTGKKRARVHAYLLGRPATDEEIEIALNMSGNTVRPTRGTLVKDGHVIDSGIRRLTRAGNQAIVWRCV
Ga0209296_10024424	F037730	GGA	MSARRQMTDFNEAESTNNYLIEQLVIARKQNEVLQEHIKELQDDIKISSQLLNACVAYMS
Ga0209296_10024429	F095479	GGCGG	MTIYTVTSKQLLNDYAVLQTLENASFEIGQTITVDDVGGDFDGEVVVYAVPQYYYIGTDGNGFPAFNPNIPINNQVMYVAVGDAVQRTPATGTIEFDPVCTWIDDGDIADWLGIEVATAGDEAFLVICAAAANAFCSLRRFENGYFDQLSVVPSSAVKLGTTMYGGALYRQRGSAGQDFATFDGMGQGTTNGLSAIVKQLLGINRAVVA