NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1002288

Scaffold Ga0209296_1002288


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1002288 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13854
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (26.09%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008356Metagenome / Metatranscriptome334Y
F020140Metagenome / Metatranscriptome225Y
F025688Metagenome / Metatranscriptome200Y
F035227Metagenome172Y
F053245Metagenome / Metatranscriptome141Y
F056337Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100228814F008356N/AMNISEFERTKPINTYKKIKELEKLIKEEQIKTENLYANRIATLDTMLKSVHDLMESFKKG
Ga0209296_100228818F056337N/AMSDDYNNNSYDAVLSRMEQKLDTISDNIDDIKKSHKNLESRVAGLEYFKYYLAGIVAAVSIGANYLMNKIKGA
Ga0209296_100228821F035227AGGVNDNVSNIHRAVNVFTLTDKDIKKYSLVKIGELFKKDDYILLYDDQYVKIGDSDHLLKMKITKENSVYRKKQV
Ga0209296_10022884F020140N/AMTHKFAVIVDKKFYNQIQNNSDFYLRVLVLDVIRALVPNEESVDKYSSDIFYKCAKSISNAVRMFEDEKSVIFYLELSSVYLDDFFEKPLDDLE
Ga0209296_10022886F025688N/AMKFILNIDGSNAGGKFLENYVGQEVHLDSLYKDIDINSPPLAILKTEDGKQHSVQLIDIRFINEFVFIQCFAIQHDDKQGGKALLRLKPVCDLEKVINP
Ga0209296_10022887F053245N/AMKNVTIKIGDNDLEALKDIFKNEADFKPQAQQDLLIIEILKQVLNNPKNEIIDIEV
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