Scaffold Ga0209296_1002227

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1002227
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14090
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (89.47%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003784	Metagenome	468	Y
F004110	Metagenome	452	Y
F005558	Metagenome	396	Y
F006653	Metagenome / Metatranscriptome	367	Y
F013279	Metagenome / Metatranscriptome	272	Y
F014590	Metagenome	261	Y
F027417	Metagenome	194	Y
F031792	Metagenome	181	Y
F093483	Metagenome	106	Y
F093528	Metagenome	106	Y
F095162	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100222713	F006653	AGGAGG	MSEPELTNKYRDNLKIDALRADVDSIKVDLTNFVGALLQSGVVELVKDEEGNVVYKINKVVLVDESVQQD
Ga0209296_100222718	F003784	GGA	MYDNDRERVGHNATDFAAYGLSHLATGHSNTTDTHTPPTNPLVDHAAVTGYRGQGVTTEDLTSFIESFASLRAHRVKGVGHDQYSHAKGQKFESFTASDTVRELIEELADASNYIDFLAIKLLNIQHTIDRVLPDCD
Ga0209296_100222719	F004110	AGG	VTELHPVIYDLVPSVANTIHRRYVKHVEKDDIKQELMAWAMTRVEDHTVDLMEPIEERRRHNEQRIAWQMKRAGERYARKEKAAKSGYQTNDEVYYQTATLGQLLPFVIASVIDGTVLEQAQEMIKDGQPKGSSSPAEGGNLLANLIDIKNGFLKLDQEDQTLLRLRHHENFTLQQIAQFLECAVSTADRRCDKSLRRLQDNLGGISPWQ
Ga0209296_100222721	F013279	AGGCGG	MQYDYRCPDCNTDITIERSIHEDPREPSCFDCHIPMVRKWDSPAITFKGKGFYSNGG
Ga0209296_100222723	F014590	GGAGG	VRTRHLSLVTQERLDTANKKPDALSPYGPVRAGLTTSQTTSDQQLLELLSSLENAVENLNYKSFTAYDTLVIAMEGVRVALSAIVTDEAGIDETA
Ga0209296_100222724	F095162	GGAGG	MENNKRLASAAKQAVYYRNYRRARDRALVKLAQAYPDTYKELLEKEKVSDEQEGKAWIDLDGTTITPRIVARAKARGITLTQADTNQGNDGGEA
Ga0209296_100222727	F031792	GGAG	MGYEPELNDPIFYEEEKEREIKCFICSDTLDEDDIVWADCEGQWQVRGREGNDTAWCVSCLPSEKGESNE
Ga0209296_100222729	F093528	AGGAG	MSEETTTHVVTLVIQAGSKWNKVELFDFSGGEPTPLASGEGSNWRTALGEALSKITLSSDVPDKAVNDVVKEIQEEAGE
Ga0209296_100222731	F005558	AGGAG	MDQDTMYWSELAELTHTTQVERFNFCTCEDNEGNDNPYEDCPKEYK
Ga0209296_100222732	F027417	GGAGG	MTYDYRVTFITDYLTITTNVCLEGDDHFQNLSDEAYEQATINGMNNIEDEIGKIDETIINDITVTLLLDDEEIELGGFGEFPPVHVSVIEGEGE
Ga0209296_100222735	F093483	AGAAGG	VTIERVQHSGALIVSALVYHQGLRWLESSTYYGYEEEEAKRSFIESCARLRYELEEGEE