Scaffold Ga0209296_1002173

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1002173
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14317
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (50.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005846	Metagenome	388	Y
F012113	Metagenome / Metatranscriptome	283	Y
F025225	Metagenome	202	Y
F025739	Metagenome / Metatranscriptome	200	Y
F074559	Metagenome	119	N
F093506	Metagenome	106	Y
F104721	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100217312	F025739	N/A	MRKWIAGFIVASLLCGCVTTRPYDIGQVPNQDSITDFIMRWDRLDRTKATPEEYRELFGQSLKTISRLVEENERLRKRLDQ
Ga0209296_100217314	F012113	N/A	MEQILTFIQSQDVFAWVGALVALLSAVIAVASLIPGDEPEATLSKIVSFLSKFSKK
Ga0209296_100217318	F093506	AGGA	MATTIISNISSFDYEPDILTDNGRDGITSFQFSIVGGFSALNSNFSLGQDISGVPDQPPGNFKVVRRNMSHIAGDVGNGLYRVQITGEGGTGDNSLFVLETSYQYQKEIVTGFIQLPTADAAVTYICEWLSPTVTITTNNQTEDVTDVQNRAKALVASQPVQIIRNKPDRIAPVGTVQYPVFGAGIDVDAINIVGSSVENAGGLFRVRASATKGQIQLVL
Ga0209296_100217320	F025225	N/A	MITVELLNQAKFVHKLQQYQKESRKNMAKVINDKLGDVAVTAIGTTYRTNAAQIASELQRVVGKVVTKKVFKPIGFTKSGKIKKRKIGEFAVGYKAQSQSYVGTYKLVNWLLKNRGLPTLGKTKLGVGGLGMGTKPGTIGALARRLVAGRKRSINYIRNGWAAAASVFGKRAGLVRGDYSKEAIMRLGGGSKADEKQAQIEGVIFNRAGDKDTRYYPPRKRAISGAAKVGMPGLEAAISKVMMDMDKYLARKNKEASDKLKL
Ga0209296_100217323	F104721	N/A	MQEKILYTRNIKLASVLATFGIPFRESEPMAVVEDADNGNKRSVTFFFTDIPNGLGGRLVELWEKGWSAITNYDDPLAYCRAVLENRERLLDAINNATPLVKKQFGKATLLVSKNASPELRKKLSKYL
Ga0209296_10021736	F005846	N/A	MTSFPLPARPVGSAVSVLHDEFSEGFSIEGKLNGWRGWFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDIPNNKLLRFVHLAHHKISSIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPYITNPYYCSPAWRKQRIRW
Ga0209296_10021738	F074559	N/A	MKAQNPWQKLLQEHIKDKFAPPQPAGYYTREQVSKLWQKSMNTTSRMLNQMLEQKKVEMKRHPFIIARKDHRVIRNLKIYKILPTKPPRK