NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209296_1002173

Scaffold Ga0209296_1002173


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1002173 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14317
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (50.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005846Metagenome388Y
F012113Metagenome / Metatranscriptome283Y
F025225Metagenome202Y
F025739Metagenome / Metatranscriptome200Y
F074559Metagenome119N
F093506Metagenome106Y
F104721Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100217312F025739N/AMRKWIAGFIVASLLCGCVTTRPYDIGQVPNQDSITDFIMRWDRLDRTKATPEEYRELFGQSLKTISRLVEENERLRKRLDQ
Ga0209296_100217314F012113N/AMEQILTFIQSQDVFAWVGALVALLSAVIAVASLIPGDEPEATLSKIVSFLSKFSKK
Ga0209296_100217318F093506AGGAMATTIISNISSFDYEPDILTDNGRDGITSFQFSIVGGFSALNSNFSLGQDISGVPDQPPGNFKVVRRNMSHIAGDVGNGLYRVQITGEGGTGDNSLFVLETSYQYQKEIVTGFIQLPTADAAVTYICEWLSPTVTITTNNQTEDVTDVQNRAKALVASQPVQIIRNKPDRIAPVGTVQYPVFGAGIDVDAINIVGSSVENAGGLFRVRASATKGQIQLVL
Ga0209296_100217320F025225N/AMITVELLNQAKFVHKLQQYQKESRKNMAKVINDKLGDVAVTAIGTTYRTNAAQIASELQRVVGKVVTKKVFKPIGFTKSGKIKKRKIGEFAVGYKAQSQSYVGTYKLVNWLLKNRGLPTLGKTKLGVGGLGMGTKPGTIGALARRLVAGRKRSINYIRNGWAAAASVFGKRAGLVRGDYSKEAIMRLGGGSKADEKQAQIEGVIFNRAGDKDTRYYPPRKRAISGAAKVGMPGLEAAISKVMMDMDKYLARKNKEASDKLKL
Ga0209296_100217323F104721N/AMQEKILYTRNIKLASVLATFGIPFRESEPMAVVEDADNGNKRSVTFFFTDIPNGLGGRLVELWEKGWSAITNYDDPLAYCRAVLENRERLLDAINNATPLVKKQFGKATLLVSKNASPELRKKLSKYL
Ga0209296_10021736F005846N/AMTSFPLPARPVGSAVSVLHDEFSEGFSIEGKLNGWRGWFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDIPNNKLLRFVHLAHHKISSIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPYITNPYYCSPAWRKQRIRW
Ga0209296_10021738F074559N/AMKAQNPWQKLLQEHIKDKFAPPQPAGYYTREQVSKLWQKSMNTTSRMLNQMLEQKKVEMKRHPFIIARKDHRVIRNLKIYKILPTKPPRK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.