NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209296_1002121

Scaffold Ga0209296_1002121


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1002121 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14474
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001182Metagenome755Y
F001424Metagenome / Metatranscriptome698Y
F003407Metagenome / Metatranscriptome488Y
F007360Metagenome / Metatranscriptome352N
F093377Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10021211F093377AGGMAKAQTLSELADNIVERQLTLRDQAAVERKEMSGINKKIHAFGGEAMLFDHISEGKTVNSVIKSLDISIGGFYKWIEKDAKRGELLARARTRGGRSLAE
Ga0209296_100212111F003407GGAMNQDLPPALEACLDLVKDLLHPEVFGHSIPNEVKTRAFVVRTMLERLKARMDKQT
Ga0209296_100212115F007360N/AMRQNPTPEPQRYADAQLMALLDPSSKRDTILITPGSPMPSRIPDGLTVAETSRGIVITSDPSKVRIIDQGSEKDVGMALFGYAYDQAKGFDNVAVAMDRAGTPVAELAIKPGQERRAMRAASLLAPDTGSTNMMSRGDVVSTRLRGLLD
Ga0209296_10021213F001424GGAGGMVNQIEKLSTGYPQSDKWVEDDRVFCHQCSKAVEVDMKQSMPAEQMERHRKVNAKPLQWMFDQAKIRNGWATITWSEHQCSQTGLATFPTDVKHRCHLFQAKATAVESESWWLT
Ga0209296_10021218F001182GGAGGMNYGPTPSCPRGLFQFECCIEDVDLVCFLEYSPEEKGSVDSLGSPYEPDFEECMTLNNAYIADTDVDIAHMILQGFVDHIEVTALAKYKDGDE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.