Scaffold Ga0209296_1002120

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1002120
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14474
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F001731	Metagenome	644	Y
F002433	Metagenome / Metatranscriptome	559	Y
F010982	Metagenome	296	N
F029109	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100212012	F001731	N/A	MSVFNPVWRVTIGGVQYQTAILANLTITSGRTNIYEQAQAGYTNIELINLDQSNVVIGINDSLTIELQDSTATYVPIFGGSVVEVGISVAELGNIAYAQRVKIIALGALARLPKALTNGVLTQAFDGTQIYKVLSGVLFNQWQQVPAALTWATYDPTETWANAQNTGLGEIDQPGNYELAARSSDRTDVYSLVAALANSGVGYIYEDAQGLISYADSTHRTTYLAANGYVNLSANDAQGAGLSIQQRTGDVRNAITLKYGTNSTSEVSATDSASIGLYGQLAQIFTTTVKHKADAQDQANFYLDLRAYPQYNFNQISYQLTNPEIDDGDRDSLINVFMGMPLAIADLPLNMSAGTYLGFVEGWTFQAAYNQIGVTLILSPLAFSLQAMRWNDVPIVETWNSVIPTLDWEHATQVA
Ga0209296_100212014	F029109	GGAG	MAFKATKGQGSFRIEVEPYELKNLISTLNSLDKESQSRVRDAAQPLSKRLAGQLMMFGGSSPTPQTKLVLQSMLTPRDRLIRVDIGGPKKVGRPYGGTASKSGKGNKVGRSAAPAGALLWGSEYGSHSGIDRAGRRYTNRFKAPQNKSGYWINDAVDYYTPIVAKEYIAVVQGIINDLRL
Ga0209296_10021203	F010982	GGAG	MVRLSREDEIVAHTAGLARESYYGSNPKFLGNKGNFHNAVVIHSEAVGAEMAVAKYFGVEDFVPTVNTFKNEPDVYWNGIAIEVKQTPHKRGHLIISEDDRDTDIAVLVVGESPTYYVMGWIPVGVAKRPRFQSAQGGYWVSQINLQPIETLRKSIHANT
Ga0209296_10021204	F000403	AGAAG	MRSKLASHEQRWQMEATVMSGPIEIINPRTMSCTLMEDGVIIATYKVEQCDKCSKLVKFDEFGYQKGFGNEKIIWFCAECR
Ga0209296_10021206	F002433	N/A	VSVGEWTAVGGLVIAVLTAIYSSMRFMVKSIMRELSPNGGNSLKDQVSRIEERLNQLILELALKK