Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1002029 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1002029 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14839
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (11.76%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

14839

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (11.76%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005814	Metagenome	389	Y
F006463	Metagenome / Metatranscriptome	372	N
F009004	Metagenome / Metatranscriptome	324	Y
F009958	Metagenome / Metatranscriptome	310	Y
F014573	Metagenome / Metatranscriptome	262	N
F019965	Metagenome	226	N
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100202912	F014573	N/A	MYIQDEQLRTELKNILRLKTRNSIVKEIQDKGNKFHFFQLTNFLQGKDVSLSTLKKIDNFVNR
Ga0209296_100202921	F005814	N/A	MELDLLSSRINLNHTCIKLEVSIEDIKTKHPNRTDLISSMEQSLHEIKKAMVVYQTLEKEFRATRQINFDLQHINLELKQDVKDLKKIIEFNNLEL
Ga0209296_100202929	F006463	N/A	MKSGTTYEQLDWWQRQWRGTFDLGLYLEICRIKKNEQIKYKEMKRFKATFKTWAYVGAPVKLETRIVEAYDFQHVKNLIQKNDDIIIEIKQIEQ
Ga0209296_100202930	F009958	N/A	MENRNLEFWNKGWELTYEFTGWTYSIAGTWEFNDYDEVSEFAFIELDVELSEKWETETDDNLQPHVLGVRILEDLRLEMQEAINSDLAHYNFWEWKTSNDDSNYTFYHEL
Ga0209296_100202931	F034772	N/A	MKNLIDYFTPTTEEHKSFLMHFLSTLTMFIVLGGTFYCLMYLKAL
Ga0209296_100202932	F009004	AGG	LVTHINLKTMKTEFNKVIDFLETQQQEDKQNTNQLHLIIQTLCTFLDDEQLKEVENLFNQFKK
Ga0209296_10020295	F019965	AGG	MNELEIMMQCVQIYIYQKKGVKIRIYLRDIRDINMLKQAYDYIQKNEHNKNTNN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1002029

Overview

Ecosystem & Geography

Associated Families

Sequences