Scaffold Ga0209296_1001963

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1001963
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15081
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (56.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024097	Metagenome / Metatranscriptome	207	N
F053256	Metagenome	141	Y
F054668	Metagenome / Metatranscriptome	139	Y
F075841	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100196321	F075841	AGG	MKMDRKYVRRRRVVAVVIYLFLVSLFTYAIRDVCWVGNGYGSCSVMIDKVIADGR
Ga0209296_100196329	F024097	GGA	MANPNGRKGALFETDVMRWLRSVGAIAERLTKAGSKDEGDIVCIVAGKTYILELKNRKSISLPAFWEEAITEAENYAKARGLEQTPPAYVIIKRRNSGIEKAWVVENLEQWVKRND
Ga0209296_10019636	F053256	GAGG	MTEQTGIELTPKEVRILEVASYKANIETYKTLLSTLDGKWDAELGHLKELEPQEAARQCPMDKLERLAVLQQYDQVTNLLKTEIVECAKASAILAIM
Ga0209296_10019638	F054668	AGGAG	MGISTRQVTVTTTATALVDATAEAEMVYLHSSSGTCFVGNSDVTASTGYKMDNGDKITLDNKANGIWAITSAGTVTMQVMAIGK