Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1001941 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1001941 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15147
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (15.79%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

15147

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (15.79%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F007169	Metagenome / Metatranscriptome	356	N
F009682	Metagenome / Metatranscriptome	314	Y
F033033	Metagenome	178	N
F059659	Metagenome / Metatranscriptome	133	N
F097321	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10019411	F097321	N/A	IDIDDENDCDDDCGCNISEGHNYSDSTYLAIKNYVEGRIEAGLPPTLKSIQSRLKGIFITCQEIKDICLDLKFTVQEDDDTALSNSVVTISSESDDQ
Ga0209296_100194115	F007169	N/A	MSYQLPFDFETPERKEQRLKDWHDQQIKLNKMFEGKANDYYIYNKYVDQFIDFLPYRLGWGLRGNYNELRWWIKCQYQKFRYGVSDDEVYSLETNIAKYMVPRLQYFKKKGKMGIPMKFLPSNYDNLQDEDREKAEKIGEKEINRILDEIIFAFDYIIDPDKYVTFPKSCSWDIKDKNYFNREKNLEAKQAWDEYTKTCDQLETRKKQGLQLFVDHMDMLWI
Ga0209296_100194121	F009682	N/A	MIKDLYMKNINDKILVQSDDLKFDGKNIIIPSYYASIVYDYLDNVNIEDMNLNDADMHDYLAFCSFFEAIIDHKADKGGN
Ga0209296_100194122	F059659	AGGAGG	MGMYNSVDCQYPLPMPEDPKGYTGSHSFQTKDFECALDLYIIDKDGQLLIERRDTEWIEGDPNGEGFLSKMGHLKTIKTWLEPLTNTCTIQFYDFIDSNKTDYDYFITYEAVFINGKISSVKIINFEANDNAKRKIRDIEFAKKNKENYQFRQTWQYNYFVKPYNRVISFIFFKTIKVLSFLSTTLYKIERNIRI
Ga0209296_100194123	F001840	N/A	MKEEKDSVFLICNCFSHGLLVEKFEGEEEVCLSLFERGMDGRILRWSERLRWCWQILRYGKPWSDFIILNTDNRKRLKEFLENK
Ga0209296_10019418	F033033	N/A	MKAILEFNLPEDQKQFEIANQSADMHAVICHLGERLRSYRKHGNHFENVSEALDAIHTILYDELNARHINIHD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1001941

Overview

Ecosystem & Geography

Associated Families

Sequences