Scaffold Ga0209296_1001805

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1001805
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15810
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056336	Metagenome	137	Y
F088364	Metagenome	109	Y
F093376	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10018051	F056336	N/A	IGQRREAACEEDFPTCGGKDLKPRLKETVGMVHYWLDRVRINEGPTDVPVVPVSFVTANAYQHDQLNRIVAPEDEVVDMVEVAKNDWVFELKPGDVFPVQIIASIQATLDASKFDGMMFPVVYRGSPVLEKRFYKRSGGENVQQSSMPIFNLNAPPVVSEV
Ga0209296_100180516	F093376	N/A	MPSSVLQPGLLMVEEGMYYGPKNTNYEVMVMTDDALRSQMTTRNNKYYADKPYDFPDLYIVNPVNKFLTWDPTSTYAMYQSESYAKRYPTDK
Ga0209296_10018057	F088364	N/A	MWVLNLIEQCRPRNFQVHQMFRHDGDELIPVDEFRTGEHGHVDYYFGGQLYTHLGCWPIQNIIPRFSVPVHSAIFINDEDRKPTVCTETVRRHSGPTQSPVSFDIYAPRPHFTVSFSGGLRFSLGIKWILVKKVSGTVRVQNVLGQMTRLDV