Scaffold Ga0209296_1001785

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1001785
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15932
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (73.08%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013413	Metagenome	271	N
F014620	Metagenome	261	N
F024785	Metagenome	204	Y
F032279	Metagenome	180	Y
F038591	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100178514	F038591	N/A	MTTTARIEVVGVKDTINQLNKLDKELAKEFKASATQIAQPAMNAAKNMYTKVPLSGLSRNWKSQKRTPPQNIKGFDVSRAKAGVQMKFDTKRNAVGVILIIQKDQAAAIFETAGRANANRLSNNLDPVRPGRTRLIGPAVYSARRGIEREMKSVIAEASRTVQKGL
Ga0209296_10017854	F014620	GGA	MFAPSIGLGGTFERPAVNRDIVIIAREAKQTSVDAAIKAKPKTGKKRQRVHAYLLGRPATDEEIETALNMSGNTVRPTRGTLVKDGHVIDSGIRRLTRAGNQAIVWRCV
Ga0209296_10017855	F013413	GAG	MVDDCLRINSATTVIYPVQNINLNRKEKAMTENEYDKTFDLQMEREHQETVRRMQEFRLIGEQISKMPDTPPKVLEIEVRYLMGIIKELETRIKDLESEVRRLENCISRG
Ga0209296_10017856	F032279	GAGG	MPFIIKTIIAFALSAIGLGVYHVPQPRPDMASTTPTEKPYEAVGGFGQAMADIYRYVPPVTTTTPPAPVYKHGDCSWLPAVAMQAGWSAEQIPQLTKYALRESGCCPNRAGGDNVDKNCNITGVSDWSHRSDSGLMQINGVHWMPSHAQYDGLVCKQMRICTQEPLLDALTNLRAARLIYSQVGWSAWDICHREKNCK
Ga0209296_10017857	F024785	AGCAG	MKPYTITAAPVVAKPLAGMNLWVTRAVYHSDKSLWNNGSWVVRDVRGKPGIMSNHAKGVACDISYRWISATNKGRQDGRKVSLAYMNKLLENADTLGIELVIDYALNRSWKCDRATWKAGTFEPGDWWHVEVNPVIAHSAELAKQAWDKVFGVIPAVVKKPV