Scaffold Ga0209296_1001728

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1001728
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16298
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (58.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F010016	Metagenome	309	Y
F012016	Metagenome	284	Y
F014840	Metagenome	259	Y
F034908	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100172811	F010016	N/A	MKKTARNDITGDFIHSKPSSDMFEKNFDLIFRKKKPEETEYELNKSTGEVQKKAE
Ga0209296_100172820	F014840	AGGTGG	MIPFSYAVVDDEGEVIRQYRWSVKEAKWFTDNNPHAKVIRLEKVKQVKEDLFKLVGECLF
Ga0209296_100172822	F006587	AGGAG	MNDKYEGTGYSIVGFIIGCCLMWAVMQYAHTQKKYSMNLKCVQGELYEEIRPNFYVKSHLECFEQRTL
Ga0209296_100172823	F012016	AGG	MQTTLKQPFAWAIEEFNSDGELVWSSIMQTRPVELSWIRDLPTKKHNIVITPLYKDEANAEKITGIKSYRESTQRLADAFNGL
Ga0209296_100172829	F034908	N/A	SMEETKYEEVKKWGVEPSDHIATIISEPLREKGMVVKAYATEVDHSLYDRQKKHADHLVQADAYNDIENEIIARACIGGVCED